emerencia - hard facts fast

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Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.

Accession DQ525472: Comparing with sequences in the identified database

 
 
Accession number: DQ525472 Genbank entry
Species annotation: Pleopsidium cf. chlorophanum Feuerer 18.2.2003 
Annotation: Pleopsidium cf. chlorophanum Feuerer 18.2.2003 voucher Feuerer
Source publication: Reeb,V., Haugen,P., Bhattacharya,D. and Lutzoni,F. Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease J. Mol. Evol. 64 (3), 285-298 (2007)
Date of inclusion: 2010-08-18
 
   Present best BLAST match: DQ525481 Genbank entry
   Species annotation of this match: Pleopsidium chlorophanum  ToL?
   Annotation of this match: Pleopsidium chlorophanum voucher Bargagli 577 (TSB) 18S ribosomal
   BLAST E-value and score of this match (against DQ525472): 0.0, 1495
   Source publication: Reeb,V., Haugen,P., Bhattacharya,D. and Lutzoni,F. Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease J. Mol. Evol. 64 (3), 285-298 (2007)
   Date of inclusion of this match: 2010-08-18

      This sequence lacks a previous (now obsolete) best BLAST match.

Alignment

Below is the alignment of the insufficiently identified sequence (DQ525472) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 98.7515605493134 Length: 826 bp. Number of gaps: 1627

   
 
 DQ525472        GAGGAAGTAAAAGTCGTAACAAGGTTTCCTTCCGGGTGTAGCACCTGCCGAAGCCTCCCG
 DQ525481        -----------AGTCGTAACAAGGTTTCCTTCCGGGTGTAGCACCTGCCGAAGCCTCCCG
                            *************************************************
 
 DQ525472        CAGCGACTCTAAAGAAACTGCGCAGTCTGCCCCCCTGCAGGCAACACTGTCACTGTGCTG
 DQ525481        CAGCGACTCTAAAGAAACCGCGCAGTCTGCCCCCCTGCAGGCAACACTGTCACTGTGCTG
                 ****************** *****************************************
 
 DQ525472        GGAGCCTGTCACGCCTGGTTCAGGCGCCGCTACCAGCAACCTGGGCAACGACGCCCAGGC
 DQ525481        GGAGCCAGTCACGCCTGGTTCAGGCGCCGCTACCAGCAACCTGGGCAACAACGCCCAGGC
                 ****** ****************************************** **********
 
 DQ525472        TCACAGATCAGATGATCGTGGCCACACCGTGGTTAAGATATGACCGGTCCCCGCTGTGGA
 DQ525481        TCACAGATCAGATGATTGTGGCCACACCGTGGTTAAGATATGACCGGTCCCCGCTGTGGA
                 **************** *******************************************
 
 DQ525472        CAGCTGGGAGCTTACGTTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTTAGGGTC
 DQ525481        CAGCTGGGAGCTTACGTTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTTAGGGTC
                 ************************************************************
 
 DQ525472        TTCCGGGCCCGATCTCCAACCCTATGTCTACCTACCTTTGTTGCTTTGGCGGGCCCGCTG
 DQ525481        TTCCGGGCCCGATCTCCAACCCTATGTCTACCTACCTTTGTT-CTTTGGCGGGCCCGCTG
                 ****************************************** *****************
 
 DQ525472        GGGGAGACCCACCGGTGGCTCCGGCTGCCGAGCGCCCGCCAGAGACCCATCAAACCCTGT
 DQ525481        GGGGAGACCCACCGGTGGCTCCGGCTGCCGAGCGCCCGTCAGAGACCCATCGAACCCTGT
                 ************************************** ************ ********
 
 DQ525472        TAATCATGTAGTCCGAGTACCAATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGT
 DQ525481        TAATCATGTAGTCTGAGTACCAATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGT
                 ************* **********************************************
 
 DQ525472        TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGT
 DQ525481        TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGT
                 ************************************************************
 
 DQ525472        GAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAGGGGCATGCCTGTT
 DQ525481        GAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAGGGGCATGCCTGTT
                 ************************************************************
 
 DQ525472        CGAGCGTCATTACACCACTCAAGCACAGCTTGGTATTGGGCCTCGTCCCCCGCGGACGTG
 DQ525481        CGAGCGTCATTACACCACTCAAGCACAGCTTGGTATTGGGCCTCGTCCCCCGCGGACGTG
                 ************************************************************
 
 DQ525472        CCTGGAAACCAGTGGCGGCGCAGCCCGGCTTCAAGCGTACTAACTCAACCGCCGCTTTGG
 DQ525481        CCTGGAAACCAGTGGCGGCGCAGCCCGACTTCAAGCGTAGTAACTTAACCGCCGCTTTGG
                 *************************** *********** ***** **************
 
 DQ525472        AAGTCTCGGGCCTGGGTCTGCCGGACAACCCCCATCTTTCTAAAAGGTTGACCTCGGATC
 DQ525481        AAGTCTCGGGCCTGGGTCTGCCGGACAACCCCCATCTTTCTAAAAGGTTGACCTCGGATC
                 ************************************************************
 
 DQ525472        AGGTAGGGATACCCGCTGAACTTAAGCATATCA-------------
 DQ525481        AGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCNGGAGGA
                 *********************************

Accession DQ525472: Comparing with sequences in the insufficiently identified database


   Present best BLAST match to the insufficiently identified database: DQ525503 Genbank entry
   Species annotation of this match: Pleopsidium cf. chlorophanum Riefner 87-426 
   Annotation of this match: Pleopsidium cf. chlorophanum Riefner 87-426 voucher Riefner 87-426
   BLAST E-value and of this match (against DQ525472): 0.0, 761
   Source publication: Reeb,V., Haugen,P., Bhattacharya,D. and Lutzoni,F. Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease J. Mol. Evol. 64 (3), 285-298 (2007)
   Date of inclusion of this match: 2010-08-18
 
      This sequence lacks a previous (now obsolete) best BLAST match in the insufficiently identified database.

Alignment

Below is the alignment of the insufficiently identified sequence (DQ525472) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 80.4697156983931 Length: 884 bp. Number of gaps: 1693

   
 
 DQ525472        -------------------------GAGGAAGTAAAAGTCGTAACAAGGTTTC-----CT
 DQ525503        AGTAAAAGTCGTAACAAGGTTTCCGCGCTGAGGAACATTCGTCTCACATATCCACAAACA
                                               ** ** * ****  **    * *     * 
 
 DQ525472        TCCGGGTGTAGCACCTGCCGAAGCCTCCCG--CAGCGACTCTAAAG----AAACTGCGC-
 DQ525503        TGTAAGCAAACCACCT-CTGAAGCCTTGAAATTTACAAGTCTACATCCGTAGGCGACACT
                 *    *   * ***** * *******         * * **** *     *  *  * * 
 
 DQ525472        AGTCTGC---------CCCCCTGCAGGCAAC--ACTGTCACTGTGCTGGGAGCCTGTCAC
 DQ525503        AGTCTGTTGCTGGGAACCTCCTGCAGGTAATCAGCAGCCACAGTACTGAATGTATGTGGT
                 ******          ** ******** **    * * *** ** ***   *  ***   
 
 DQ525472        GCCTGGTTCAGGCGCCGCTACCAGCAACCTGGG----CAACGACGCC-CAGGCTCACAGA
 DQ525503        TCACAGATCAAACACTAGTGACCCATATATAAGAGACCCACCACATCACCTCCCTGCAGG
                  *   * ***  * *   *  *    *  *  *    * ** **  * *   *   *** 
 
 DQ525472        TCAGATGA-----------------TCGTGGCCACACCGTGG-TTAAGATATGACCGGTC
 DQ525503        GCATCTGCCTTCGGGCACTTCCGGTTTGTGGTTATCTTGTGGGTTAAAATATGACCGGCT
                  **  **                  * ****  *    **** **** **********  
 
 DQ525472        CCCGCTGTGGACAGCTGGGAGCTTACGTTCCGTAGGTGAACCTGCGGAAGGATCATTACA
 DQ525503        CCATCTAGAAATAGATGGGCTATTGTGTTCCGTAGGTGAACCTGCGGAAGGATCATTACT
                 **  **    * ** ****   **  ********************************* 
 
 DQ525472        GAGTTAGGGTCTTCCGGGCCCGATCTCCAACCCTATGTCTACCTACCTTTGTTGCTTTGG
 DQ525503        GAGCTAGGGTCTTCCAGGCCCGACCTCCAACCCGATGTCTTCATACCTTTGTTGCTTTGG
                 *** *********** ******* ********* ****** * *****************
 
 DQ525472        CGGGCCCGCTGGGGGAGACCCACCGGTGGCTCCGGCTGCCGAGCGCCCGCCAGAGACCCA
 DQ525503        CGGGCCCGCTGGGG-ACCCCCACCGGTGGCTCTGGCTGCCGAGTGCCCGTCAAAGACCCA
                 ************** *  ************** ********** ***** ** *******
 
 DQ525472        TCAAACCCTGTTAATCATGTAGTCCGAGTACCAATACAATAGTTAAAACTTTCAACAACG
 DQ525503        TCAAACTCTGTCAGTTGTGTAGTCTGAGTACCAATACAATAGTTAAAACTTTCAACAACG
                 ****** **** * *  ******* ***********************************
 
 DQ525472        GATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTG
 DQ525503        GATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTG
                 ************************************************************
 
 DQ525472        CAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAGGG
 DQ525503        CAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAGGG
                 ************************************************************
 
 DQ525472        GCATGCCTGTTCGAGCGTCATTACACCACTCAAGCACAGCTTGGTATTGGGCCTCGTCCC
 DQ525503        GCATGCCTGTTCGAGCGTCATTACACCACTCAAGCACGGCTTGGTATTGGGTCTCGTCCC
                 ************************************* ************* ********
 
 DQ525472        CCGCGGACGTGCCTGGAAACCAGTGGCGGCGCAGCCCGGCTTCAAGCGTACTAACTCAAC
 DQ525503        CCGAGGATGTGCCCGGAACTCAGTGGCGGCACAGCCCGGCTTCAAGCGTAGTAAATCAAT
                 *** *** ***** ****  ********** ******************* *** **** 
 
 DQ525472        CGCCGCTTTGGAAGTCTCGGGCCTGGGTCTGCCGGACAACCCCCATCTTTCTAAAAGGTT
 DQ525503        CGCCGCTTTGGAAGTCCTGGGCCCGTGTCCGCCAGACAACCCCCATATCTTTTTAAGGTT
                 ****************  ***** * *** *** ************ * * *  ******
 
 DQ525472        GACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA
 DQ525503        GACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATAT--
                 ******************************************

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