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Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.
Accession AY833048: Comparing with sequences in the identified database
Accession number: AY833048 Genbank entry
Species annotation: uncultured Basidiomycota
Annotation: Uncultured Basidiomycota isolate 1 note unknown Cortinariaceae
Source publication: Julou,T., Burghardt,B., Gebauer,G., Berveiller,D., Damesin,C. and Selosse,M.A. Mixotrophy in orchids: insights from a comparative study of green individuals and nonphotosynthetic individuals of Cephalanthera damasonium New Phytol. 166 (2), 639-653 (2005)
Date of inclusion: 2010-08-18
Present best BLAST match: JF908204 Genbank entry
Species annotation of this match: Inocybe oblectabilis ToL?
Annotation of this match: Inocybe oblectabilis voucher 21504 18S ribosomal RNA gene, internal
BLAST E-value and score of this match (against AY833048): 1e-179, 628
Source publication: Osmundson,T.W., Robert,V.A., Schoch,C.L., Baker,L.J., Smith,A., Robich,G., Mizzan,L. and Garbelotto,M.M. Filling gaps in biodiversity knowledge for macrofungi: contributions and assessment of an herbarium collection DNA barcode sequencing project PLoS ONE 8 (4), E62419 (2013) REMARK Publication Status: Online-Only
Date of inclusion of this match: 2014-11-03
Previous best BLAST match: AM882833 Genbank entry
Species annotation of previous best BLAST match: Inocybe oblectabilis ToL?
Annotation of this match: Inocybe oblectabilis ITS1, 5.8S rRNA gene and ITS2, specimen
BLAST E-value and score of this match (against AY833048): 1e-175, 615
Source publication: Ryberg,M., Nilsson,R.H., Kristiansson,E., Topel,M., Jacobsson,S. and Larsson,E. Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota) BMC Evol. Biol. 8, 50 (2008) REMARK Publication Status: Online-Only
Date of inclusion of this match: 2010-08-18
Alignment
Below is the alignment of the insufficiently identified sequence (AY833048) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.
Percent identity (of non-gapped bp.): 95.5953200275293 Length: 579 bp. Number of gaps: 1574
JF908204 -TGAATAAATTTGAACGGGCTGTTGCTGGCTCTGTTGAGTGATGTGCACGCTTGTCATGT
AM882833 ATGAATAAATTTGAACGGGCTGTTGCTGGCTCTGTTGAGCGATGTGCACGCTTGTGATGT
AY833048 -----------------------TGCAGGCTCTGTTGAGTGATGTGCACGCCTGTCATGT
*** ************ *********** *** ****
JF908204 TTATGTTTCCAACTGTGCACACATTGTAGATCTGGTGGAATTTTATGTTGCTTGCAAATA
AM882833 TTATGTTTCCAACTGTGCACACATTGTAGATCTGGTGGAATTTTATGTTGCTTGCGA-TA
AY833048 TTATGTTTCCAACTGTGCACACATTGTAGATCTGGTGGAATTTTATGTTGCTTGCAA-TA
******************************************************* * **
JF908204 ATAGAGTGAGGATTTTGCT-----GTATGGCACTCCTTGTCTGCTAGGTCTATGTTCACA
AM882833 ATAGAGTGAGGATTT-GCT-----GTATGGCTCTCCTTGTCTGCTAGGTCTATGTTGACA
AY833048 CTAGAGTGAGGATTTGCTTTGTATGTATGGCTCTCCTTGTCTGCTAGGTCTATGTTGACA
************** * ******* ************************ ***
JF908204 AACTCTGAAATGGTTATAGAATGT--TGGAGAAAATTTTTTTTTACAACTTTCAGCAACG
AM882833 AACTCTGAAATGGTATTAGAATGTATTGGAAAAAAAATAAATTTACAACTTTCAGCAACG
AY833048 AACTCTGAAATGGTATTAGAATGA-TTGGGAAAAAAAAAATTATACAACTTTCAGCAACG
************** ******* *** **** * *****************
JF908204 GATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTG
AM882833 GATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTG
AY833048 GATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTG
************************************************************
JF908204 CAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCTGAGGA
AM882833 CAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCTGAGGA
AY833048 CAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGA
****************************************************** *****
JF908204 GCATGCCTGTTTGAGTGTCATCAAGTTCTCAACCC-GCATCCTTTTTGAAGGGATGTG--
AM882833 GCATGCCTGTTTGAGTGTCATCAAGTTCTCAACCCCACATCCTTTTTGAAGGGACGTG--
AY833048 GCATGCCTGTTTGAGTGTCATCGAGTTCTCAACCT-GCATCCATTTTGAAGGGATGTGTG
********************** *********** ***** *********** ***
JF908204 GATTTGGATTATGGAGTTTGCAGGCTTGATT-GAAAGGTCTGCTCCTCTGAAATGTATTA
AM882833 GATTTGGATTATGGAGTTTGCAGGCTTGATTTGAAAGGTCTGCTCCTCTGAAATGTATTA
AY833048 GATTTGGATTATGGAGTTTGCAGGCTTGATT---GAGGTCTGCTCCTCTGAAACGTATTA
******************************* ****************** ******
JF908204 GTGGCAATGTGGAAAAGCTACTGTGGGTGTGATAACTATCTATGCCTATGCAGTGCTCTG
AM882833 GTGGCAATGTGGAAAAGCTACTGTGGGTGTGATAACTATCTATGCCTATGCAGTGCTCTG
AY833048 GTGGCAATGTGGAAAA--------------------------------------------
****************
JF908204 CTGTGTGCC------------------------------
AM882833 CTGTGCCGCTTTGGAGAGAGAAATTTATTTCTGACAAAC
AY833048 ---------------------------------------
Accession AY833048: Comparing with sequences in the insufficiently identified database
Present best BLAST match to the insufficiently identified database: FR852246 Genbank entry
Species annotation of this match: uncultured Inocybe
Annotation of this match: Uncultured Inocybe genomic DNA containing ITS1, 5.8S rRNA gene,
BLAST E-value and of this match (against AY833048): 0.0, 799
Source publication: Bahram,M., Polme,S., Koljalg,U., Zarre,S. and Tedersoo,L. Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran New Phytol. 193 (2), 465-473 (2012)
Date of inclusion of this match: 2011-08-04
Previous best BLAST match in the insufficiently identified database: AJ893272 Genbank entry
Species annotation of this match: uncultured Inocybe
Annotation of this match: Uncultured ectomycorrhiza (Inocybe) 5.8S rRNA gene, 28S rRNA gene
BLAST E-value and score of this match (against AY833048): 1e-180, 628
Source publication: Tedersoo,L., Suvi,T., Larsson,E. and Koljalg,U. Diversity and community structure of ectomycorrhizal fungi in a wooded meadow Mycol. Res. 110 (PT 6), 734-748 (2006)
Date of inclusion of this match: 2010-08-18
Alignment
Below is the alignment of the insufficiently identified sequence (AY833048) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.
Percent identity (of non-gapped bp.): 90.5109489051095 Length: 772 bp. Number of gaps: 1957
AY833048 ------------------------------------TGCAGGCTCTGTTGAGTGATGTGC
FR852246 GGAAGGATCATTATTGAATAAATTTGAACGGGCTGTTGCTGGCTCTGTTGAGTGATGTGC
AJ893272 -------------TTGAATNAATTTGAACGGGCTGTTGCTGGCTCTGTTGAGCGATGTGC
*** ************ *******
AY833048 ACGCCTGTCATGTTTATGTTTCCAACTGTGCACACATTGTAGATCTGGTGGAATTTTATG
FR852246 ACGCCTGTCATGTTTATGTTTCCAACTGTGCACACATTGTAGATCTGGTGGAATTTTATG
AJ893272 ACGCTTGTGATGTTTATGTTTCCAACTGTGCACACATTGTAGATCTGGTGGAATTTTATG
**** *** ***************************************************
AY833048 TTGCTTGCAATACTAGAGTGAGGATTTGCTTTGTATGTATGGCTCTCCTTGTCTGCTAGG
FR852246 TTGCTTGCAATACTAGAGTGAGGATTTGCTTGTATTGTATGGCTCTCCTTGTCTGCTAGG
AJ893272 TTGCTTGCGATAATAGAGTGAGGATTTGCT------GTATGGCTCTCCTTGTCTGCTAGG
******** *** ***************** ************************
AY833048 TCTATGTTGACAAACTCTGAAATGGTATTAGAATG-ATTGGGAAAAAAAAAATT-ATACA
FR852246 TCTATGTTGACAAACTCTGAAATGGTATTAGAATG-ATTGGGAAAAAAAAAATTTATACA
AJ893272 TCTATGTTGACAAACTCTGAAATGGTATTAGAATGTATTGGAAAAAAAATAAAT-TTACA
*********************************** ***** ******* ** * ****
AY833048 ACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAA
FR852246 ACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAA
AJ893272 ACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAA
************************************************************
AY833048 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTT
FR852246 GTAATGTGAATTGCAAAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTT
AJ893272 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTT
*************** ********************************************
AY833048 GGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATCGAGTTCTCAACCTGCATCCATTTTG
FR852246 GGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATCGAGTTCTCAACCCGCATCCATTTTG
AJ893272 GGTATTCTGAGGAGCATGCCTGTTTGAGTGTCATCAAGTTCTCAACCCACATCCTTTTTG
******* *************************** *********** ***** *****
AY833048 AAGGGATGTGTGGATTTGGATTATGGAGTTTGCAGGCTTGATT---GAGGTCTGCTCCTC
FR852246 AAGGGATGTGTGGATTTGGATTATGGAGTTTGCAGGCTTGATT---GAGGTCTGCTCCTC
AJ893272 AAGGGACGTG--GATTTGGATTATGGAGTTTGCAGGCTTGATTTGAAAGGTCTGCTCCTC
****** *** ******************************* *************
AY833048 TGAAACGTATTAGTGGCAATGTGGAAAA--------------------------------
FR852246 TGAAACGTATTAGTGGCAATGTGGAAAAGCTACTGTGGGTGTGATAACTATCTATGCCTA
AJ893272 TGAAATGTATTAGTGGCAATGTGGAAAAGCTACTGTGGGTGTGATAACTATCTATGCCTA
***** **********************
AY833048 ------------------------------------------------------------
FR852246 TGCAGTGCTCTGCTGTGCCGCTTTGGAGGGAGAAATTTATTTCTGACAAACTTGACTCTC
AJ893272 TGCAGTGCTCTGCTGTGCCGCTTTGGAGAGAGAAATTTATTTCTGACAAACTTGACCTCA
AY833048 ------------------------------------------------------------
FR852246 AAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAAGAAACT
AJ893272 AATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAA
AY833048 ------------------------------------------------------------
FR852246 AACAAGGGATTCCCCTATTAACTGCGAGTGAAGCGGGAGAAGCTCAAATTTGAAATCTGG
AJ893272 CAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAGAAGCTCAAATTTGAAATCTGGCAG
AY833048 ----------------------------------------------------
FR852246 CAGTATTGTTTTGCTGTCCGAGTTGTAATCTAGAGAAGTGTTACCCGTGCTG
AJ893272 TATTCGATTGCTGTCCGAGTTGTA----------------------------
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