emerencia - hard facts fast

hard facts fast

Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.

Accession AY634128: Comparing with sequences in the identified database

Accession number: AY634128 Genbank entry
Species annotation: uncultured Ceratobasidiaceae
Annotation: Uncultured ectomycorrhiza (Ceratobasidiaceae) 4117 internal
Source publication: Bidartondo,M.I., Burghardt,B., Gebauer,G., Bruns,T.D. and Read,D.J. Changing partners in the dark: isotopic and molecular evidence of ectomycorrhizal liaisons between forest orchids and trees Proc. R. Soc. Lond., B, Biol. Sci. 271 (1550), (2004)
Date of inclusion: 2010-08-18
Present best BLAST match: JQ676922 Genbank entry
Species annotation of this match: Rhizoctonia solani ToL?
Annotation of this match: Rhizoctonia solani strain R101 18S ribosomal RNA gene, partial
BLAST E-value and score of this match (against AY634128): 0.0, 1082
Source publication: Zhou,Q. and Hwang,S. Genetic variation of Rhizoctonia solani from Canola in Alberta Canada Unpublished
Date of inclusion of this match: 2014-11-03
Previous best BLAST match: AJ716305 Genbank entry
Species annotation of previous best BLAST match: Sclerotinia spermophila (anamorph: Botrytis anthophila) ToL?
Annotation of this match: Botrytis anthophila 5.8S rRNA gene, ITS1 and ITS2, strain
BLAST E-value and score of this match (against AY634128): 0.0, 824
Source publication: Staats,M., van Baarlen,P. and van Kan,J.A. Molecular phylogeny of the plant pathogenic genus Botrytis and the evolution of host specificity Mol. Biol. Evol. 22 (2), 333-346 (2005)
Date of inclusion of this match: 2010-08-18

Alignment

Below is the alignment of the insufficiently identified sequence (AY634128) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 92.3896499238965 Length: 693 bp. Number of gaps: 2015

   
 
 AY634128        CTTGGTCATTTAGAGGAAGTAAAAGTCGTRACAAGGTTTCSGTAGGTGAACCTGCGGAAG
 JQ676922        --------------GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAG
 AJ716305        -------------------TGTAAACGACGGCCAG--TTCCGTAGGTGAACCTGCGGAAG
                                    *  **       * **  *** *******************
 
 AY634128        GATCATTATTGAATGAACATGGAGTTGGTTGTTGCTGGCCCCTTTATTGGGGCATGTGCA
 JQ676922        GATCATTATTGAATGAACATGGAGTCGGTTGTCGCTGGCCCCTTCACTGGGGCATGTGCA
 AJ716305        GATCATTATCGAATGAAATCGGAGTCGGTTGTCGCTGGCCTCTTCACCGAGGCATGTGCA
                 ********* *******   ***** ****** ******* *** *  * **********
 
 AY634128        CACCTCCTCTATTCATCCACACACACCTGTGAACTTGTGAGACGGATAGTAGCCCTCTCG
 JQ676922        CGCCTTCTCTATTCATCCACACACACCTGTGAACTTGTGAGACGGATAGTAGTCCCCTCG
 AJ716305        CGCCTTCTCTGTTAATCCACACACACCTGTGCACTTGTGAGACGGAT--TAACCCTCTCG
                 * *** **** ** ***************** ***************  **  ** ****
 
 AY634128        GGGGCGAGGTCCGTCTGCTATACATAAACTCCAGTATATAAATTTGAATGTCATTTGATG
 JQ676922        GGGGTGAGCTCCGTCTGCTATACATAAACTCCAGTAAATAAATTTGAATGTCATCTGATG
 AJ716305        GGGGGACGGTCCGTCTATCATACATAAACTCCAATATATAAATTTGAATGTAATCAGATG
                 ****   * *******   ************** ** ************** **  ****
 
 AY634128        TAACACATCTATAAACTAAGTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAA
 JQ676922        TAACGCATCTATAAACTAAGTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAA
 AJ716305        TAACGCATCTTTAAACTAAGTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAA
                 **** ***** *************************************************
 
 AY634128        CGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGA
 JQ676922        CGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGA
 AJ716305        CGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGA
                 ************************************************************
 
 AY634128        ACGCACCTTGCGCTCCTTGGTATTCCTCGGAGCATGCCTGTTTGAGTATCATGAAATCCT
 JQ676922        ACGCACCTTGCGCTCCTTGGTATTCCTCGGAGCATGCCTGTTTGAGTATCATGAAATTCT
 AJ716305        ACGCACCTTGCGCTCCTTGGTATTCCTCGGAGCATGCCTGTTTGAGTATCATGAAATTCT
                 ********************************************************* **
 
 AY634128        CAAAATAAATCTTTTGTTCATTCGATTGATTTTATTTTGGACTTGGAGGTCTGCAGATTC
 JQ676922        CAAAATAAATCTTTTGTTCATTCAATTGGTTTTGTTTTGGACTTGGAGGTCTGCAGATTC
 AJ716305        CAAAATAAATCTTTTGTTAATTCAATTGGTTTCATTTTGGACTTGGAGGTCTGCAGATTC
                 ****************** **** **** ***  **************************
 
 AY634128        ACGTCTGCTCCTCTTAAATTCATTAGCTGGATCTGTATGAACTCGGTTCCACTCGGCGTG
 JQ676922        ACGTCTGCTCCTCTTAAATTCATTAGCTGGATCTCTATGAACTTGGTTCCACTCGGCGTG
 AJ716305        ACGTCTGCTCCTCTTAAATTCATTAGCTGGATCCCTGTGAACTCGGTTCCACTCGGCGTG
                 *********************************  * ****** ****************
 
 AY634128        ATAAGTATCACTCGCTGAGGACACTGTAAAAGGTGGCCGGGATTATT-ATGAACCGCTTC
 JQ676922        ATAAGTATCACTCGCTGAGGACACTGTAAAAGGTGGCCAGGATTGTGGAAGAACTGCTTC
 AJ716305        ATAAGTATCACTCGCTGAGGACACTGTAAAAAGTGGCCGGGGTTGCTGTAGAACCGCTTC
                 ******************************* ****** ** **      **** *****
 
 AY634128        TAATAGTCCATTGACTTGGACAAATTACTTATGATCTGATCTCAAATCAGGTAGGACTAC
 JQ676922        TAACAGTCCATTCGCTTGGACAATATACTTATGATCTGATCTCAAATCAGGTAGGACTAC
 AJ716305        TAATAGTCTATTCAATTAGACAATTTATTTATGATCTGATCTCAAATCAGGTAGGACTAC
                 *** **** ***   ** *****  ** ********************************
 
 AY634128        CCGCTGAACTTAAGCATATCAATAAGC------
 JQ676922        CCGCTGAACTTAAGCATATCAATAAGCGGAGGA
 AJ716305        CCGCTAA--CTAAGC------------------
                 ***** *   *****

Accession AY634128: Comparing with sequences in the insufficiently identified database


   Present best BLAST match to the insufficiently identified database: FN397154 Genbank entry
   Species annotation of this match: uncultured fungus 
   Annotation of this match: Uncultured fungus genomic DNA sequence containing 18S rRNA gene,
   BLAST E-value and of this match (against AY634128): 0.0, 1339
   Source publication: Napoli,C., Mello,A., Borra,A., Vizzini,A., Sourzat,P. and Bonfante,P. Tuber melanosporum, when dominant, affects fungal dynamics in truffle grounds New Phytol. (2009) In press REMARK Publication Status: Available-Online prior to print
   Date of inclusion of this match: 2010-08-18
 
      This sequence lacks a previous (now obsolete) best BLAST match in the insufficiently identified database.

Alignment

Below is the alignment of the insufficiently identified sequence (AY634128) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 99.4169096209913 Length: 692 bp. Number of gaps: 1378

   
 
 AY634128        CTTGGTCATTTAGAGGAAGTAAAAGTCGTRACAAGGTTTCSGTAGGTGAACCTGCGGAAG
 FN397154        CTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAG
                 ***************************** ********** *******************
 
 AY634128        GATCATTATTGAATGAACATGGAGTTGGTTGTTGCTGGCCCCTTTATTGGGGCATGTGCA
 FN397154        GATCATTATTGAATGAACATGGAGTTGGTTGTTGCTGGCCCCTATATTGGGGCATGTGCA
                 ******************************************* ****************
 
 AY634128        CACCTCCTCTATTCATCCACACACACCTGTGAACTTGTGAGACGGATAGTAGCCCTCTCG
 FN397154        CACCTCCTCTATTCATCCACACACACCTGTGAACTTGTGAGACGGATAGTAGCCCTCTCG
                 ************************************************************
 
 AY634128        GGGGCGAGGTCCGTCTGCTATACATAAACTCCAGTATATAAATTTGAATGTCATTTGATG
 FN397154        GGGGCGAGGTCCGTCTGCTATACATAAACTCCAGTATATAAATTTGAATGTCATTTGATG
                 ************************************************************
 
 AY634128        TAACACATCTATAAACTAAGTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAA
 FN397154        TAACACATCTATAAACTAAGTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAA
                 ************************************************************
 
 AY634128        CGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGA
 FN397154        CGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGA
                 ************************************************************
 
 AY634128        ACGCACCTTGCGCTCCTTGGTATTCCTCGGAGCATGCCTGTTTGAGTATCATGAAATCCT
 FN397154        ACGCACCTTGCGCTCCTTGGTATTCCTCGGAGCATGCCTGTTTGAGTATCATGAAATCCT
                 ************************************************************
 
 AY634128        CAAAATAAATCTTTTGTTCATTCGATTGATTTTATTTTGGACTTGGAGGTCTGCAGATTC
 FN397154        CAAAATAAATCTTTTGTTCATTCGATTGATTTTATTTTGGACTTGGAGGTCTGCAGATTC
                 ************************************************************
 
 AY634128        ACGTCTGCTCCTCTTAAATTCATTAGCTGGATCTGTATGAACTCGGTTCCACTCGGCGTG
 FN397154        ACGTCTGCTCCTCTTAAATTCATTAGCTGGATCTGTATGAACTCGGCTCCACTCGGCGTG
                 ********************************************** *************
 
 AY634128        ATAAGTATCACTCGCTGAGGACACTGTAAAAGGTGGCCGGGATTATTATGAACCGCTTCT
 FN397154        ATAAGTATCACTCGCTGAGGACACTGTAAAAGGTGGCCGGGATTATTATGAACCGCTTCT
                 ************************************************************
 
 AY634128        AATAGTCCATTGACTTGGACAAATTACTTATGATCTGATCTCAAATCAGGTAGGACTACC
 FN397154        AATAGTCCATTGACTTGGACAAATTACTTATGATCTGATCTCAAATCAGGTAGGACTACC
                 ************************************************************
 
 AY634128        CGCTGAACTTAAGCATATCAATAAGC------
 FN397154        CGCTGAACTTAAGCATATCAATAAGCGGAGGA
                 **************************

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