emerencia - hard facts fast

hard facts fast

Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.

Accession AY310870: Comparing with sequences in the identified database

 
 
Accession number: AY310870 Genbank entry
Species annotation: uncultured ectomycorrhizal fungus 
Annotation: Uncultured ectomycorrhizal fungus note PCR # TAM459 internal
Source publication: Kennedy,P.G., Izzo,A.D. and Bruns,T.D. High potential for common mycorrhizal networks between understory and canopy trees in a mixed evergreen forest Unpublished
Date of inclusion: 2010-08-18
 
   Present best BLAST match: DQ825428 Genbank entry
   Species annotation of this match: Tricholoma myomyces  ToL?
   Annotation of this match: Tricholoma myomyces internal transcribed spacer 1, partial
   BLAST E-value and score of this match (against AY310870): 0.0, 741
   Source publication: Hofstetter,V., Kauff,F., Clemencon,H., Moncalvo,J.-M., Redhead,S. and Vilgalys,R. What tell us evolutionary mutation rates about systematics and ecological transitions within the Lyophylleae-Tricholomateae clade (Basidiomycota)? Unpublished
   Date of inclusion of this match: 2010-08-18

      This sequence lacks a previous (now obsolete) best BLAST match.

Alignment

Below is the alignment of the insufficiently identified sequence (AY310870) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 97.0982142857143 Length: 560 bp. Number of gaps: 1008

   
 
 AY310870        ------------------------------------------------------------
 DQ825428        GGTTGTTGCTGGCTCTTAGGAGTATGTGCACGCCTAACACCAACTTTTACCACCTGTGCA
                                                                             
 
 AY310870        ----------ACCTGGATAAAACTCTCGAGGAAACTCGGTTTGAGGAATGCTGTGCGCAA
 DQ825428        CCTTCTGTAGACCTGGAAAAAACTCTCGAGGAAACTCGGTTTGAGGACTGCTGTGCGCAA
                           ******* ***************************** ************
 
 AY310870        GCCAGCTTTCCTTGTACTTCTGGTCTATGTTTTTATATATAAACNCCTAT-AGAATGTCT
 DQ825428        GCCGGCTTTCCTTGTAATTCCGGTCTATGTTTTTATATATA--CCCCTACCAGTATGTCT
                 *** ************ *** ********************  * ****  ** ******
 
 AY310870        CAGAATGTTTGTTTGTTGGGCTTGAATGCCTTTAAACTTAATACAACTTTCAACAACGGA
 DQ825428        CAGAATGTTTGTT-GTTGGGCTTGAATGCCTTTAAACTTAATACAACTTTCAACAACGGA
                 ************* **********************************************
 
 AY310870        TCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCA
 DQ825428        TCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCA
                 ************************************************************
 
 AY310870        GAATTCAGTGAATCATCGAATCTTTGAACGCNCCTTGCGCTCCTTGGTATTCCGAGGAGC
 DQ825428        GAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGC
                 ******************************* ****************************
 
 AY310870        ATGCCTGTTTGAGTGTCATGAAATTCTCAACCTTTTCAGCTTTTTCTGTTGATCAGGCTT
 DQ825428        ATGCCTGTTTGAGTGTCATGAAATTCTCAACCTTTTCAACTTTTTCTGTTGATCAGGCTT
                 ************************************** *********************
 
 AY310870        GGATTGTGGGAGTATGCGGGCTTCTCAGAAGTCGGCTCTCCTGAAATGCATTAGCGGGAC
 DQ825428        GGAT-GTGGGAGTATGCGGGCTTCTCAGAAGTCGGCTCTCCTGAAATGCATTAGCGGGAC
                 **** *******************************************************
 
 AY310870        CTTTGTTGCCTTGCTTTGGTGTGATAATTATCTACGCCATTCG-----------------
 DQ825428        CTTTGTTGCCTGGCTTTGGTGTGATAATTATCTACGCCATTGTGAAGGGCAGCTTTATAA
                 *********** *****************************                   
 
 AY310870        --------------------
 DQ825428        AAGAGGTTCAGCTTCTAATC

Accession AY310870: Comparing with sequences in the insufficiently identified database


   Present best BLAST match to the insufficiently identified database: AM181413 Genbank entry
   Species annotation of this match: uncultured Tricholomataceae 
   Annotation of this match: Uncultured ectomycorrhiza (Tricholomataceae) 5.8S rRNA gene, ITS1
   BLAST E-value and of this match (against AY310870): 0.0, 833
   Source publication: Tedersoo,L., Pellet,P., Koljalg,U. and Selosse,M.A. Diversity of pyroloid root associated fungi Unpublished
   Date of inclusion of this match: 2010-08-18
 
      This sequence lacks a previous (now obsolete) best BLAST match in the insufficiently identified database.

Alignment

Below is the alignment of the insufficiently identified sequence (AY310870) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 98.4478935698448 Length: 605 bp. Number of gaps: 1056

   
 
 AY310870        ------------------------------------------------------------
 AM181413        TTGAATAAGCTTGGTTGGGTTGTTGCTGGCTCTCAGGAGCATGTGCACGCCTAACACCAA
                                                                             
 
 AY310870        ---------------------------ACCTGGATAAAACTCTCGAGGAAACTCGGTTTG
 AM181413        CTTTTACCACCTGTGCACCTTCTGTAGACCTGGATAAAACTCTCGAGGAAACTCGGTTTG
                                            *********************************
 
 AY310870        AGGAATGCTGTGCGCAAGCCAGCTTTCCTTGTACTTCTGGTCTATGTTTTTATATATAAA
 AM181413        AGGAATGCTGTGTGCAAGCCAGCTTTCCTTGTACTTCTGGTCTATGTTTTTATATATACA
                 ************ ********************************************* *
 
 AY310870        CNCCTATAGAATGTCTCAGAATGTTTGTTTGTTGGGCTTGAATGCCTTTAAACTTAATAC
 AM181413        CCCCTATAGTATGTCTCAGAATGTTTGTTTGTTGGGCTTGAATGCCTTTAAACTTAATAC
                 * ******* **************************************************
 
 AY310870        AACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATA
 AM181413        AACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATA
                 ************************************************************
 
 AY310870        AGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCNCCTTGCGCTCCT
 AM181413        AGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCT
                 *********************************************** ************
 
 AY310870        TGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTTTTCAGCTTTT
 AM181413        TGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTTTTCAGCTTTT
                 ************************************************************
 
 AY310870        TCTGTTGATCAGGCTTGGATTGTGGGAGTATGCGGGCTTCTCAGAAGTCGGCTCTCCTGA
 AM181413        TCTGTTGATCAGGCTTGGAT-GTGGGAGTATGCGGGCTTCTCAGAAGTCGGCTCTCCTGA
                 ******************** ***************************************
 
 AY310870        AATGCATTAGCGGGACCTTTGTTGCCTTGCTTTGGTGTGATAATTATCTACGCCATTCG-
 AM181413        AATGCATTAGCGGGACCTTTGTTGCCTTGCTTTGGTGTGATAATTATCTACACCATTTGT
                 *************************************************** ***** * 
 
 AY310870        ------------------------------------------------------------
 AM181413        GAAGAGCAGCTTTATAAATGGGGTTCAGCTTCTAAAGGGTCTCTTTTGAGACAGCTTCTG
                                                                             
 
 AY310870        -----
 AM181413        ACAAT

hard facts fast