emerencia - hard facts fast

hard facts fast

Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.

Accession AY310862: Comparing with sequences in the identified database

 
 
Accession number: AY310862 Genbank entry
Species annotation: uncultured ectomycorrhizal fungus 
Annotation: Uncultured ectomycorrhizal fungus note PCR # TAM272 internal
Source publication: Kennedy,P.G., Izzo,A.D. and Bruns,T.D. High potential for common mycorrhizal networks between understory and canopy trees in a mixed evergreen forest Unpublished
Date of inclusion: 2010-08-18
 
   Present best BLAST match: AF272913 Genbank entry
   Species annotation of this match: Tomentella ellisii  ToL?
   Annotation of this match: Tomentella ellisii internal transcribed spacer 1, partial
   BLAST E-value and score of this match (against AY310862): 0.0, 896
   Source publication: Koljalg,U., Dahlberg,A., Taylor,A.F., Larsson,E., Hallenberg,N., Stenlid,J., Larsson,K.H., Fransson,P.M., Karen,O. and Jonsson,L. Diversity and abundance of resupinate thelephoroid fungi as ectomycorrhizal symbionts in Swedish boreal forests Mol. Ecol. 9 (12),  (2000)
   Date of inclusion of this match: 2010-08-18

      This sequence lacks a previous (now obsolete) best BLAST match.

Alignment

Below is the alignment of the insufficiently identified sequence (AY310862) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 97.9919678714859 Length: 577 bp. Number of gaps: 1075

   
 
 AY310862        ------------------------------------------------------------
 AF272913        CGGGGGCACGTGCACGCTCTGTTTACGCATCCACTCACACCTGTGCACCCTCGGTAGTTC
                                                                             
 
 AY310862        --------GGGAGACCCCGTCTTCCTTCCGTGGNTCTACGTCTTTACACACATACGATGT
 AF272913        TATGGTTCGGGAGACCCTGTCTTCCTTCCGTGGCTCTACGTCTTTACACACACACGACGT
                         ********* *************** ****************** **** **
 
 AY310862        CTCGTGGAATGTTTTTCGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTT
 AF272913        CTCATGGAATGTTTTTCGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTT
                 *** ********************************************************
 
 AY310862        GGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTC
 AF272913        GGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGA-TTGCAGAATTC
                 ************************************************ ***********
 
 AY310862        AGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTTATTCCTTGGGGCATGCC
 AF272913        AGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTTATTCCTTGGGGCATGCC
                 ************************************************************
 
 AY310862        TGTTTGAGTATCATGAACACCTCAACTCTCATGGTCTTCCGTGACGAGCTTGGACTTTGG
 AF272913        TGTTTGAGTATCATGAACACCTCAACTCTCACGGTCTTCCGTGACGAGCTTGGACTTTGG
                 ******************************* ****************************
 
 AY310862        GGGTTTGCTGGCCCTGTGGCCGGCTCCTCTCAAACAAATCAGCTTGCCAGTGTTTGGCGG
 AF272913        AGGTTTGCTGGCCCTGCGGCCGGCTCCTCTCAAACAAATCAGCTTGCCAGTGTTTGGCGG
                  *************** *******************************************
 
 AY310862        CATCTCACGGGTGTGATAACTATCTACGCTCGCGGTTGTCTGCCAGGTAACCCTCAGCGA
 AF272913        CATCTCACGGGTGTGATAACTATCTACGCTCGCGGTTGTCTGCCAGGTAACCCTCAGCGA
                 ************************************************************
 
 AY310862        TGAAGGTTCATTGGGGCTCACAAACGTCTCTCCTCGGCGAGGACAACTTTTGAACGTTCG
 AF272913        TGAAGGTTCATTGGGGCTCATAAACGTCTCTCCTCGGCGAGGACAGCTTTTGAACGTTCG
                 ******************** ************************ **************
 
 AY310862        ATCTCAAATCAGGTAGGACTACCCGCT----------
 AF272913        ATCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGC
                 ***************************

Accession AY310862: Comparing with sequences in the insufficiently identified database


   Present best BLAST match to the insufficiently identified database: DQ822831 Genbank entry
   Species annotation of this match: uncultured Tomentella 
   Annotation of this match: Uncultured Tomentella type OTU: RT431 18S ribosomal RNA gene,
   BLAST E-value and of this match (against AY310862): 0.0, 983
   Source publication: Peay,K.G., Bruns,T.D., Kennedy,P.G., Bergemann,S.E. and Garbelotto,M. A strong species-area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi Ecol. Lett. 10 (6), 470-480 (2007)
   Date of inclusion of this match: 2010-08-18
 
      This sequence lacks a previous (now obsolete) best BLAST match in the insufficiently identified database.

Alignment

Below is the alignment of the insufficiently identified sequence (AY310862) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 99.7995991983968 Length: 632 bp. Number of gaps: 1131

   
 
 AY310862        ------------------------------------------------------------
 DQ822831        ACCTGCGGAAGGATCATTACCGAATCGTCAAACACGGGTTGTTGCTGGCCCCCGNAACGG
                                                                             
 
 AY310862        ------------------------------------------------------------
 DQ822831        GGGCACGTGCACGCTCTGTTTACGCATCCNCTCACACCTGTGCACCCTCGGTAGTTCTAT
                                                                             
 
 AY310862        -----GGGAGACCCCGTCTTCCTTCCGTGGNTCTACGTCTTTACACACATACGATGTCTC
 DQ822831        GGTTNGGGAGACCCCGTCTTCCTTCCGTGGCTCTACGTCTTTACACACATACGATGTCTC
                      ************************* *****************************
 
 AY310862        GTGGAATGTTTTTCGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTTGGC
 DQ822831        GTGGAATGTTTTTCGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTTGGC
                 ************************************************************
 
 AY310862        TCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGT
 DQ822831        TCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGT
                 ************************************************************
 
 AY310862        GAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTTATTCCTTGGGGCATGCCTGT
 DQ822831        GAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTTATTCCTTGGGGCATGCCTGT
                 ************************************************************
 
 AY310862        TTGAGTATCATGAACACCTCAACTCTCATGGTCTTCCGTGACGAGCTTGGACTTTGGGGG
 DQ822831        TTGAGTATCATGAACACCTCAACTCTCATGGTCTTCCGTGACGAGCTTGGACTTTGGGGG
                 ************************************************************
 
 AY310862        TTTGCTGGCCCTGTGGCCGGCTCCTCTCAAACAAATCAGCTTGCCAGTGTTTGGCGGCAT
 DQ822831        TTTGCTGGCCCTGTGGCCGGCTCCTCTCAAACAAATCAGCTTGCCAGTGTTTGGCGGCAT
                 ************************************************************
 
 AY310862        CTCACGGGTGTGATAACTATCTACGCTCGCGGTTGTCTGCCAGGTAACCCTCAGCGATGA
 DQ822831        CTCACGGGTGTGATAACTATCTACGCTCGCGGTTGTCTGCCAGGTAACCCTCAGCGATGA
                 ************************************************************
 
 AY310862        AGGTTCATTGGGGCTCACAAACGTCTCTCCTCGGCGAGGACAACTTTTGAACGTTCGATC
 DQ822831        AGGTTCATTGGGGCTCACAAACGTCTCTCCTCGGCGAGGACAACTTTTGAACGTTCGATC
                 ************************************************************
 
 AY310862        TCAAATCAGGTAGGACTACCCGCT--------
 DQ822831        TCAAATCAGGTAGGACTACCCGCTGAACTTAA
                 ************************

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