emerencia - hard facts fast

hard facts fast

Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.

Accession AY295332: Comparing with sequences in the identified database

 
 
Accession number: AY295332 Genbank entry
Species annotation: Cylindrocarpon sp. DAOM 144524 
Annotation: Cylindrocarpon sp. DAOM 144524 18S ribosomal RNA gene, partial
Source publication: Seifert,K.A., McMullen,C.R., Yee,D., Reeleder,R.D. and Dobinson,K.F. Molecular Differentiation and Detection of Ginseng-Adapted Isolates of the Root Rot Fungus Cylindrocarpon destructans Phytopathology 93 (12),  (2003)
Date of inclusion: 2010-08-18
 
   Present best BLAST match: AM419075 Genbank entry
   Species annotation of this match: Neonectria macrodidyma (anamorph: Cylindrocarpon macrodidymum)  ToL?
   Annotation of this match: Neonectria macrodidyma 18S rRNA gene (partial), 5.8S rRNA gene,
   BLAST E-value and score of this match (against AY295332): 0.0, 963
   Source publication: Oliveira,H., Nascimento,T., Talhinhas,P., Cabral,A. and Rego,C. Genetic diversity of Cylindrocarpon spp. causing grapevine black-foot Unpublished
   Date of inclusion of this match: 2010-08-18

      This sequence lacks a previous (now obsolete) best BLAST match.

Alignment

Below is the alignment of the insufficiently identified sequence (AY295332) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 99.7959183673469 Length: 545 bp. Number of gaps: 1035

   
 
 AY295332        --------------------------ATTACCGAGTTTACAACTCCCAAACCCCTGTGAA
 AM419075        TCCGTAGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAACTCCCAAACCCCTGTGAA
                                           **********************************
 
 AY295332        CATACCTATTTGTTGCCTCGGCGGTGCCTGTTCCGACAGCCCGCCAGAGGACCCCAAACC
 AM419075        CATACCTATTTGTTGCCTCGGCGGTGCCTGTTCCGACAGCCCGCCAGAGGACCCCAAACC
                 ************************************************************
 
 AY295332        CTGATTACATTTAAGAAGTCTTCTGAGTAAACCGATTAAATAAATCAAAACTTTCAACAA
 AM419075        CTGATTACATTTAAGAAGTCTTCTGAGTAAACCGATTAAATAAATCAAAACTTTCAACAA
                 ************************************************************
 
 AY295332        CGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT
 AM419075        CGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT
                 ************************************************************
 
 AY295332        TGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGC
 AM419075        TGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGC
                 ************************************************************
 
 AY295332        GGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAAGCCCCCGGGCTTGGTGTTGGGGATC
 AM419075        GGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAAGCCCCCGGGCTTGGTGTTGGGGATC
                 ************************************************************
 
 AY295332        GGCGAGCCTCCGCGCCCGCCGTCCCCTAAATCTAGTGGCGGTCTCGCTGTAGCTTCCTCT
 AM419075        GGCGAGCCTCCGCGCCCGCCGTCCCCTAAATCTAGTGGCGGTCTCGCTGTAGCTTCCTCT
                 ************************************************************
 
 AY295332        GCGTAGTAGCACACCTCGCACTGGGAAACAGCGCGGCCACGCCGTTAAACCCCCAACTTC
 AM419075        GCGTAGTAGCACACCTCGCACTGGGAAACAGCGCGGCCACGCCGTTAAACCCCCAACTTC
                 ************************************************************
 
 AY295332        TGAACGTTTGACCTCGGGTCAGGTAGGAATACCCGC------------------------
 AM419075        TGAACGTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCG
                 ***************** ******************                        
 
 AY295332        -----
 AM419075        GAGGA

Accession AY295332: Comparing with sequences in the insufficiently identified database


   Present best BLAST match to the insufficiently identified database: FN397341 Genbank entry
   Species annotation of this match: uncultured fungus 
   Annotation of this match: Uncultured fungus genomic DNA sequence containing 18S rRNA gene,
   BLAST E-value and of this match (against AY295332): 0.0, 971
   Source publication: Napoli,C., Mello,A., Borra,A., Vizzini,A., Sourzat,P. and Bonfante,P. Tuber melanosporum, when dominant, affects fungal dynamics in truffle grounds New Phytol. (2009) In press REMARK Publication Status: Available-Online prior to print
   Date of inclusion of this match: 2010-08-18
 
      This sequence lacks a previous (now obsolete) best BLAST match in the insufficiently identified database.

Alignment

Below is the alignment of the insufficiently identified sequence (AY295332) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 43.7238493723849 Length: 594 bp. Number of gaps: 1072

   
 
 AY295332        --------------------------------------------------ATTACCGAGT
 FN397341        TCCTCCGCTTATTGATATGCTTAAGTTCAGCGGGTATTCCTACCTGACCCGAGGTCAAAC
                                                                        * *  
 
 AY295332        TTACAACTCCCAAACCCCTGTGAACATACCTAT-TTGTTGCCTCG-GCGGTGCCTGTTCC
 FN397341        GTTCAGAAGTTGGGGGTTTAACGGCGTGGCCGCGCTGTTTCCCAGTGCGAGGTGTGCTAC
                  * **             *     * *  *     **** **  * ***  *  ** * *
 
 AY295332        GACAGCCCGCCAGAGGACCCCAAACCCTGATTACATTTAAGAAGTCTTCTGAGTAAACCG
 FN397341        TACGCAGAGGAAGCTACAGCGAGACCGCCACTAGATTTAGGGGACGGCGGGCGCGGA--G
                  **     *  **      * * ***   * ** ***** *         * *   *  *
 
 AY295332        ATTAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTC----TGGCA-TCGATGAAG
 FN397341        GCTCGCCGATCCCCAACACCAAGCCCGGGGGCTTGAGGGTTGAAATGACGCTCGGACAGG
                   *     *  *  ***    * *   **  **   ** *     ** *  ***   * *
 
 AY295332        AACGC--AGCGAAATGCGATAAG---TAATGTGAATTGCAGAATTCAGTGAATCATCGAA
 FN397341        CATGCCCGCCAGAATACTAGCGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAA
                  * **    *  *** * *   *    ******  **  *  ****  *** ***  ***
 
 AY295332        TCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATT
 FN397341        TTCTGCAATTCACATTAC---TTATCGCATTTCGCTG--CGTTCTTCATCGA-TGCCA--
                 *  *  **  ****** *      * * ***  *  *  * * * *   ***  * **  
 
 AY295332        TCAACCCTCAAGCCCCCGGGCTTGGTGTTGGGGATCGGCGAGCC--TCCGCGCCCGCCGT
 FN397341        --GAACCAAGAGATCCGTTGTTGAAAGTTTTGATTTATTTAATCGGTTTACTCAGAAGAC
                    * **   **  **   * *    ***  *  *     *  *  *   * *       
 
 AY295332        CCCCTAAATCTAGTGGCGGTCTCG----CTGTAGCTTCCTCTGCGTAGTAGCACACCTCG
 FN397341        TTCTTAAATGTAATCAGGGTTTGGGGTCCTCTGGCGGGCTGTCGGAACAGGCACCGCCGA
                   * ***** ** *   *** * *    ** * **   ** *  * *   ****  *   
 
 AY295332        CACTGGGAAACAGCGCGGCCACGCCGTT----AAACCCCCAACTTCTGAACGTTTGACCT
 FN397341        GGCAACAAATAGGTATGTTCACAGGGGTTTGGGAGTTGTAAACTCGGTAATGATCCCTCC
                   *    **   *   *  ***   * *     *      ****    ** * *    * 
 
 AY295332        --CGGGTCAGGTAGGAATACCCGC------------------------------
 FN397341        GCTGGTTCACCAACGGAGACCTTGTTACGACTTTTACTTCCTCTAAATGACCAA
                    ** ***   * * * ***

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