hard facts fast
Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.
Accession AJ581535: Comparing with sequences in the identified database
Accession number: AJ581535 Genbank entry
Species annotation: uncultured Tomentella
Annotation: Uncultured Tomentella sp. 5.8S rRNA gene, 18S rRNA gene, 28S rRNA
Source publication: Gargas,A. and Krueger,D. Environmental clones from rhizosphere of Rhamnus cathartica Unpublished
Date of inclusion: 2010-08-18
Present best BLAST match: JQ711987 Genbank entry
Species annotation of this match: Tomentella badia ToL?
Annotation of this match: Tomentella badia isolate FFP541 18S ribosomal RNA gene, internal
BLAST E-value and score of this match (against AJ581535): 0.0, 720
Source publication: Jones,M.D., Phillips,L.A., Treu,R., Ward,V. and Berch,S.M. Functional responses of ectomycorrhizal fungal communities to long-term fertilization of lodgepole pine (Pinus contorta Dougl. ex Loud. var. latifolia Engelm.) stands in central British Columbia Agric., Ecosyst. Environ., Appl. Soil Ecol. 60, 29-40 (2012)
Date of inclusion of this match: 2014-11-03
Previous best BLAST match: JX630675 Genbank entry
Species annotation of previous best BLAST match: Tomentella badia ToL?
Annotation of this match: Tomentella badia clone DH_D5_9a 18S ribosomal RNA, partial
BLAST E-value and score of this match (against AJ581535): 0.0, 670
Source publication: Timling,I., Dahlberg,A., Walker,D.A., Gardes,M., Charcosset,J.Y., Welker,J.M. and Taylor,D.L. Distribution and drivers of ectomycorrhizal fungal communities across the North American Arctic Ecosphere 3 (11), 111 (2012)
Date of inclusion of this match: 2014-10-24
Alignment
Below is the alignment of the insufficiently identified sequence (AJ581535) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.
Percent identity (of non-gapped bp.): 94.0876656472987 Length: 881 bp. Number of gaps: 2206
JQ711987 CAGATTGGCTTCGGAGGTCCGGCAACGGCCCACTGTCGCTGAGAAGTTGATCAAACTTGG
JX630675 ------------------------------------------------------------
AJ581535 ------------------------------------------------------------
JQ711987 TCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA
JX630675 ----TTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA
AJ581535 ---------TGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA
**************************************************
JQ711987 TTACCGAATTGTCAACAAGGGTTGTTGCTGGTCCTCGAACAGGGGGACATGTGCACGCTC
JX630675 TTACTGAATTGTCAACAAGAGTTGTTGCTGGTCCTCAAACGGGGG--CATGTGCACACTC
AJ581535 TTACTGAATTGTAAACAAGGGTTGTTGCTGGTCCTCAAATGGGGG-ACATGTGCACGCTC
**** ******* ****** **************** ** **** ********* ***
JQ711987 TGTTCACACATCCACTCACACCATGTGCACCCTCTGTAGTTCTATGGTCGGGGGGCCT--
JX630675 TGTTCACACATCCACTCACACCCTGTGCACCCTCTGTAGTTCTATGGTCGGGGGACCT--
AJ581535 TGTTCACACATCCAATCACACC-TGTGCACCCTCTGCAGTTCTGTGGTCAGGGGGGCTTT
************** ******* ************* ****** ***** **** **
JQ711987 GTCCTCCTG--CTGTGGTTCTGCTTCTTTACACACGCAC------CGTAACAAAGTCTCA
JX630675 GTCCTCCTG--CTATGGTTCTGCGTCTTTACACACACAT------TGTAACAAAGTCTCA
AJ581535 GCCTTCCTGTGCTGTGGTTCTGCTTCTTTACACACACACACACACTGTAACAAAGTCTTG
* * ***** ** ********* *********** ** ************
JQ711987 TGGAATGCATGCCGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTTGGCT
JX630675 TGGAATGCATGTAGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTTGGCT
AJ581535 TGGGATGTATGCCGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTTGGCT
*** *** *** ***********************************************
JQ711987 CTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTG
JX630675 CTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTG
AJ581535 CTCGCATCGATGGAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTG
************ ***********************************************
JQ711987 AATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGCCACCCCCAAAGGGCATGCCTGT
JX630675 AATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGCCATTCC-GAAGGGCATGCCTGT
AJ581535 AATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGCCATTCC-GAAGGGCATGCCTGT
**************************************** ** **************
JQ711987 TTGAGTATCATGAACACCTCAACTCTTCATGGTTTTCCATGATGAGCTTGGACTTTGGGG
JX630675 TTGAGTATCATGAACACCTCAACTCTTCATGGTTTTCCATGATGAGTTTGGACTTTGGGG
AJ581535 TTGAGTATCATGAACACCTCAACTCTTCATGGTCTTCTATGATGAGCTTGGACTTTGGGG
********************************* *** ******** *************
JQ711987 GTTTTGCTGGCCTT-GTGGTCAGCTCCTCTAAAATGAATCAGCTTGCCAGTGTTTGGTGG
JX630675 GTCTTGCTGGCCT--ACGGTCAGCTCCTCTAAAATAAATCAGCTTGCCAGTGTTTGGTGG
AJ581535 GT-TTGCTGGCCCATTTGGTCAGCTCCTCTCAAATGAATCAGCTTACCAGTGTTTGGTGG
** ********* ************* **** ********* **************
JQ711987 GCATCACAGGTGTGATAACTATCTACGCTTGTGGTT-TTCCACCAGGTAACCTTCAGCAG
JX630675 GTATCATAGGTGTGATAACTATCTACGCTTGTGGTTCTTCCATCAGGTAACCTTCAGCAG
AJ581535 -CACCACAGGTGTGATAACAATCTACGCTTGAGGTT-TTCCACCAGGCAACCTTCATCAA
* ** ************ *********** **** ***** **** ******** **
JQ711987 TGGAGGTTCG-CTGGAGCTCACAGATGTCTCTCCTCAGTGAGGACAGCCCTTTGAATGTT
JX630675 TGGAGGTTCA-CTGGAGCTCACAGATGTCTCTCCTCAGTGAGGACAGCCCTTTGAATGTT
AJ581535 TGGGGGTTCAACTGGGGCTCACAAATGTCTTTCTTCAGTGAGGACAGCTCTTTGAATGTT
*** ***** **** ******* ****** ** ************** ***********
JQ711987 TGATCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA
JX630675 TGATCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAAT-------------
AJ581535 -GATCTC-----------------------------------------------------
******
JQ711987 GAAACTAACAAGGATTCCCCTAGTAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTAAAA
JX630675 ------------------------------------------------------------
AJ581535 ------------------------------------------------------------
JQ711987 TCTGGCGTGCCTCTGGTCGTCCGAGTTGTAGTCTGGAGAAG
JX630675 -----------------------------------------
AJ581535 -----------------------------------------
Accession AJ581535: Comparing with sequences in the insufficiently identified database
Present best BLAST match to the insufficiently identified database: AJ581550 Genbank entry
Species annotation of this match: uncultured Tomentella
Annotation of this match: Uncultured Tomentella sp. 5.8S rRNA gene, 18S rRNA gene, 28S rRNA
BLAST E-value and of this match (against AJ581535): 0.0, 1130
Source publication: Gargas,A. and Krueger,D. Environmental clones from rhizosphere of Rhamnus cathartica Unpublished
Date of inclusion of this match: 2010-08-18
This sequence lacks a previous (now obsolete) best BLAST match in the insufficiently identified database.
Alignment
Below is the alignment of the insufficiently identified sequence (AJ581535) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.
Percent identity (of non-gapped bp.): 99.3808049535604 Length: 657 bp. Number of gaps: 1303
AJ581535 --TGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACTGA
AJ581550 TTGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACTGA
*********************************************************
AJ581535 ATTGTAAACAAGGGTTGTTGCTGGTCCTCAAATGGGGGACATGTGCACGCTCTGTTCACA
AJ581550 ATTGTAAACAAGGGTTGTTGCTGGTCCTCAAATGGGGGACATGTGCACGCTCTGTTCACA
************************************************************
AJ581535 CATCCAATCACACCTGTGCACCCTCTGCAGTTCTGTGGTCAGGGGGGCTTTGCCTTCCTG
AJ581550 CATCCAATCACACCTGTGCACCCTCTGCAGTTCCGTGGTCAGGGGGGCTTTGCCTTCCTG
********************************* **************************
AJ581535 TGCTGTGGTTCTGCTTCTTTACACACACACACACACTGTAACAAAGTCTTGTGGGATGTA
AJ581550 TGCTGTGGTTCTGCTTCTTTACACACACAC----ACTGTAACAAAGTCTTGTGGAATGTA
****************************** ******************** *****
AJ581535 TGCCGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCG
AJ581550 TGCCGCGTTTAACGCAATACAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCG
************************************************************
AJ581535 ATGGAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGA
AJ581550 ATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGA
*** ********************************************************
AJ581535 ATCTTTGAACGCACCTTGCGCCCTTTGGCCATTCCGAAGGGCATGCCTGTTTGAGTATCA
AJ581550 ATCTTTGAACGCACCTTGCGCCCTTTGGCCATTCCGAAGGGCATGCCTGTTTGAGTATCA
************************************************************
AJ581535 TGAACACCTCAACTCTTCATGGTCTTCTATGATGAGCTTGGACTTTGGGGGTTTGCTGGC
AJ581550 TGAACACCTCAACTCTTCATGGTCTTCTATGATGAGCTTGGACTTTGGGGGTTTGCTGGC
************************************************************
AJ581535 CCATTTGGTCAGCTCCTCTCAAATGAATCAGCTTACCAGTGTTTGGTGGCACCACAGGTG
AJ581550 CCATTTGGTCAGCTCCTCTCAAATGAATCAGCTTACCAGTGTTTGGTGGCACCACAGGTG
************************************************************
AJ581535 TGATAACAATCTACGCTTGAGGTTTTCCACCAGGCAACCTTCATCAATGGGGGTTCAACT
AJ581550 TGATAACAATCTACGCTTGAGGTTTTCCACCAGGCAACCTTCATCAATGGGGGTTCA-CT
********************************************************* **
AJ581535 GGGGCTCACAAATGTCTTTCTTCAGTGAGGAC-AGCTCTTTGAATGTTGATCTC---
AJ581550 GGGGCTCACAAATGTCTTTCTTCAGTGAGGACCAGCTCTTTGAATGTTGATCTCAAT
******************************** *********************
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