emerencia - hard facts fast

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Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.

Accession AF504848: Comparing with sequences in the identified database

 
 
Accession number: AF504848 Genbank entry
Species annotation: uncultured fungus 
Annotation: Uncultured fungus clone D3 18S ribosomal RNA gene, partial
Source publication: Anderson,I.C., Campbell,C.D. and Prosser,J.I. Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil Environ. Microbiol. 5 (1), 36-47 (2003)
Date of inclusion: 2010-08-18
 
   Present best BLAST match: JX975892 Genbank entry
   Species annotation of this match: Mortierella gamsii  ToL?
   Annotation of this match: Mortierella gamsii strain CBS 314.52 internal transcribed spacer 1,
   BLAST E-value and score of this match (against AF504848): 0.0, 1140
   Source publication: Wagner,L., Stielow,B., Hoffmann,K., Petkovits,T., Papp,T., Vagvolgyi,C., de Hoog,G.S., Verkley,G. and Voigt,K. A comprehensive molecular phylogeny of the Mortierellales (Mortierellomycotina) based on nuclear ribosomal DNA Persoonia 30, 77-93 (2013)
   Date of inclusion of this match: 2014-11-03
 
      Previous best BLAST match: JF439485 Genbank entry
      Species annotation of previous best BLAST match: Mortierella elongata  ToL?
      Annotation of this match: Mortierella elongata isolate F15 18S ribosomal RNA gene, partial
      BLAST E-value and score of this match (against AF504848): 0.0, 954
      Source publication: Han,G., Feng,X. and Tian,X. Isolation and evaluation of terrestrial fungi with algicidal ability from Zijin Mountain, Nanjing, China Microbiology (Reading, Engl.) (2011) In press
      Date of inclusion of this match: 2011-05-09

Alignment

Below is the alignment of the insufficiently identified sequence (AF504848) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 96.5821389195149 Length: 684 bp. Number of gaps: 1908

   
 
 AF504848        ----------------------AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAG
 JX975892        ------------------------------------------------------------
 JF439485        CTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAG
                                                                             
 
 AF504848        GATCATTCATAATAAGTGTTTTATGGCACTTTTTAAATCCATATCCACCTTGTGTGCAAT
 JX975892        ---CATTCATAATAAGTGTTTTATGGCACTTTTTAAATCCATATCCACCTTGTGTGCAAT
 JF439485        GATCATTCATAATAAGTGTTTTATGGCACTTTTTAAATCCATATCCACCTTGTGTGCAAT
                    *********************************************************
 
 AF504848        GTCAGTTGTTCTCTTTTTTGAGAAT-GACCAAACATCAAC--TTAAATTTTAACTCTTTG
 JX975892        GTCAGTTGTTCTCTTTTTTGAGAAT-GACCAAACATCAAC--TTATTCTTTAACTCTTTG
 JF439485        GTCAGTCGATCTTCTTCATGGAGATCGACCAAACATCAACCTTTATTTTTTAACTCTTTG
                 ****** * ***  **  **   ** **************  ***   ************
 
 AF504848        TCTGAAAAATATTATGAATAAAATAATTCAAAATACAACTTTCAACAACGGATCTCTTGG
 JX975892        TCTGAAAAATATTATGAATAAAATAATTCAAAATACAACTTTCAACAACGGATCTCTTGG
 JF439485        TCTGAAAAATATTATGAATAAA-CAATTCAAAATACAACTTTCAACAACGGATCTCTTGG
                 **********************  ************************************
 
 AF504848        CTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAG
 JX975892        CTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAG
 JF439485        CTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAG
                 ************************************************************
 
 AF504848        TGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGT
 JX975892        TGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGT
 JF439485        TGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGT
                 ************************************************************
 
 AF504848        TTGAGTATCAGTAAACACCTCAAAGACTTCAATTTGTTT---TGAATGGCTTTGGACTTG
 JX975892        TTGAGTATCAGTAAACACCTCAAAGACTTCAATTTGTTT---TGAATGGCTTTGGACTTG
 JF439485        TTGAGTATCAGTAAACACCTCAAAGCTTTTGGATTTTTTAATCGAAAAGCTTCGGACTTG
                 *************************  **    ** ***    ***  **** *******
 
 AF504848        AGCAATCCCAACACCAGTCTTTACGA--TCGGTGGAGGGTTGCTTGAAATGCAGGTGCAG
 JX975892        AGCAATCCCAACACCAGTCTTTACGA--TCGGTGGAGGGTTGCTTGAAATGCAGGTGCAG
 JF439485        AGCAATCCCAACACCAATCTTTTTGAGATCGGTGGCGGGTTGCTTGAAATGCAGGTGCAG
                 **************** *****  **  ******* ************************
 
 AF504848        CTGGACATTCTCCTGAGCTAAAAGCATATTTATTTAGTCCCGTCAAACGGATTATTACTT
 JX975892        CTGGACATTCTCCTGAGCTAAAAGCATATTTATTTAGTCCCGTCAAACGGATTATTACTT
 JF439485        CTGGACATTCTCCTGAGCTAAAAGCATATTCATTTAGTCCCGTCAAACGGATTATTACTT
                 ****************************** *****************************
 
 AF504848        TTGCTGCAGCTAACATAAAGGGAGTTTGACCGTATTGGCTGACTGATGCAGGATTTCACA
 JX975892        TTGCTGCAGCTAACATAAAGGGAGTTTGACCGTATTGGCTGACTGATGCAGGATTTCACA
 JF439485        TTGCTGCAGCTAACATAAAGGGAGTTTGACCGTATTGGCTGACTGATGCAGGATTTCACA
                 ************************************************************
 
 AF504848        AGGGTCGGCAACGATTCCTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAAC
 JX975892        AGGGTCGGCAACGATTCTTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAAC
 JF439485        AGGGTCGGCAACGATTCTTGTTAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAAC
                 ***************** *** **************************************
 
 AF504848        TTAA--------------------
 JX975892        TT----------------------
 JF439485        TTAAGCATATCAATAAGCGGAGGA
                 **

Accession AF504848: Comparing with sequences in the insufficiently identified database


   Present best BLAST match to the insufficiently identified database: FN391346 Genbank entry
   Species annotation of this match: uncultured fungus 
   Annotation of this match: Uncultured fungus genomic DNA sequence containing 18S rRNA gene,
   BLAST E-value and of this match (against AF504848): 0.0, 1217
   Source publication: Napoli,C., Mello,A., Borra,A., Vizzini,A., Sourzat,P. and Bonfante,P. Tuber melanosporum, when dominant, affects fungal dynamics in truffle grounds New Phytol. (2009) In press REMARK Publication Status: Available-Online prior to print
   Date of inclusion of this match: 2010-08-18
 
      This sequence lacks a previous (now obsolete) best BLAST match in the insufficiently identified database.

Alignment

Below is the alignment of the insufficiently identified sequence (AF504848) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.

Percent identity (of non-gapped bp.): 99.211356466877 Length: 672 bp. Number of gaps: 1306

   
 
 AF504848        ------------------AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC
 FN391346        GTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC
                                   ******************************************
 
 AF504848        ATTCATAATAAGTGTTTTATGGCACTTTTTAAATCCATATCCACCTTGTGTGCAATGTCA
 FN391346        ATTCATAATAAGTGTTTTATGGCACTTTTTAAATCCATATCCACCTTGTGTGCAATGTCA
                 ************************************************************
 
 AF504848        GTTGTTCTCTTTTTTGAGAATGACCAAACATCAACTTAAATTTTAACTCTTTGTCTGAAA
 FN391346        GTCGTTCTCTTTTTTGAGAATGACCAAACATCAACTTATTCTTTAACTCTTTGTCTGAAA
                 ** ***********************************   *******************
 
 AF504848        AATATTATGAATAAAATAATTCAAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGC
 FN391346        AATATTATGAATAAAATAATTCAAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGC
                 ************************************************************
 
 AF504848        ATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCA
 FN391346        ATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCA
                 ************************************************************
 
 AF504848        TCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTA
 FN391346        TCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTA
                 ************************************************************
 
 AF504848        TCAGTAAACACCTCAAAGACTTCAATTTGTTTTGAATGGCTTTGGACTTGAGCAATCCCA
 FN391346        TCAGTAAACACCTCAAAGACTTCAATTTGTTTTGAATGGCTTTGGACTTGAGCAATCCCA
                 ************************************************************
 
 AF504848        ACACCAGTCTTTACGATCGGTGGAGGGTTGCTTGAAATGCAGGTGCAGCTGGACATTCTC
 FN391346        ACACCAGTCTTTACGATCGGTGGAGGGTTGCTTGAAATGCAGGTGCAGCTGGACATTCTC
                 ************************************************************
 
 AF504848        CTGAGCTAAAAGCATATTTATTTAGTCCCGTCAAACGGATTATTACTTTTGCTGCAGCTA
 FN391346        CTGAGCTAAAAGCATATTTATTTAGTCCCGTCAAACGGATTATTACTTTTGCTGCAGCTA
                 ************************************************************
 
 AF504848        ACATAAAGGGAGTTTGACCGTATTGGCTGACTGATGCAGGATTTCACAAGGGTCGGCAAC
 FN391346        ACATAAAGGGAGTTTGACCGTATTGGCTGACTGATGCAGGATTTCACAAGGGTCGGCAAC
                 ************************************************************
 
 AF504848        GATTCCTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTTAA--------
 FN391346        GATTCTTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTTAAGCATATCA
                 ***** **********************************************        
 
 AF504848        ------------
 FN391346        ATAAGCGGAGGA

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