hard facts fast
Provided that the accession number you specified is present in the database of insufficiently identified sequences,
it's best BLAST match in the database of identified sequences - and also the previous best BLAST match, if present -
will be shown together with some statistics and additional information. In addition, the best (and previous best, if present)
BLAST match in the database of insufficiently identified sequences will be shown.
Accession AF149085: Comparing with sequences in the identified database
Accession number: AF149085 Genbank entry
Species annotation: salal mycorrhizal fungus UBCtra56
Annotation: Salal mycorrhizal fungus UBCtra56 18S ribosomal RNA gene, partial
Source publication: Millar,T., Allen,T.R. and Berbee,M.L. Molecular diversity of ericoid mycorrhizal fungi of salal Unpublished
Date of inclusion: 2010-08-18
Present best BLAST match: EF093178 Genbank entry
Species annotation of this match: Meliniomyces variabilis ToL?
Annotation of this match: Meliniomyces variabilis isolate MVA-12 18S ribosomal RNA gene,
BLAST E-value and score of this match (against AF149085): 0.0, 914
Source publication: Vohnik,M., Mrnka,L., Lukesova,T., Bruzone,M.C., Kohout,P. and Fehrer,J. The cultivable endophytic community of Norway spruce ectomycorrhizas from microhabitats lacking ericaceous hosts is dominated by ericoid mycorrhizal Meliniomyces variabilis Fungal Ecol 6 (4), 281-292 (2013)
Date of inclusion of this match: 2010-08-18
This sequence lacks a previous (now obsolete) best BLAST match.
Alignment
Below is the alignment of the insufficiently identified sequence (AF149085) and the best BLAST match from the identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.
Percent identity (of non-gapped bp.): 99.4186046511628 Length: 745 bp. Number of gaps: 1261
AF149085 --------------------------CATTAAAAAAAAGAGAAACGCCCCGTT-TTTTTC
EF093178 TTCCGTAGGTGAACCTGCGGAAGGATCATTAAAAAAA-GAGAAACGTCCCGTTCTTTTTC
*********** ******** ****** ******
AF149085 ATAAGAATGGGTTCTATTCCCTTAAACCGTGTCTACATACCTTTGTTGCTTTGGCAGGCC
EF093178 ATAAGAATGGGTTCTATTCCCTTAAACCGTGTCTACATACCTTTGTTGCTTTGGCAGGCC
************************************************************
AF149085 GCCCTCGGGCGTCGGCTCCGGCTGATAGTGCCTGCCAGAGGACCCAAACTCTATGTTTAG
EF093178 GCCTTCGGGCGTCGGCTCCGGCTGATAGTGCCTGCCAGAGGACCCAAACTCTATGTTTAG
*** ********************************************************
AF149085 TGATGTCTGAGTACTATATAATATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCA
EF093178 TGATGTCTGAGTACTATATAATATTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCA
************************************************************
AF149085 TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT
EF093178 TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT
************************************************************
AF149085 CGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGT
EF093178 CGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGT
************************************************************
AF149085 CATTATAACCACTCAAGCCTAGCTTGGTATTGGGGTT--CGCGTGTTCGCGGCCCTTAAA
EF093178 CATTATAACCACTCAAGCCTGGCTTGGTATTGGGGTTTTCGCGTGTTCGCGGCCCTTAAA
******************** **************** *********************
AF149085 ATCAGTGGCGGTGCCGTCTGGCTCTAAGCGTAGTAATTTCTCTCGCTATAGGGTTCCGGT
EF093178 ATCAGTGGCGGTGCCGTCTGGCTCTAAGCGTAGTAATTTCTCTCGCTATAGGGTTCCGGT
************************************************************
AF149085 GGTTACTTGCCAAAACCCCCCATTTTT-CTAGGTTGACCTCGGATCAGGTAGGGATACCC
EF093178 GGTTACTTGCCAAAACCCCCCATTTTTTCTAGGTTGACCTCGGATCAGGTAGGGATACCC
*************************** ********************************
AF149085 GCTGAAC-----------------------------------------------------
EF093178 GCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAA
*******
AF149085 ------------------------------------------------------------
EF093178 CGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTTTCAGGGTCCGAGTTGT
AF149085 ------------------------------------------------------------
EF093178 AATTTGTAGAAGATGCTTTGGGTGTGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCAT
AF149085 -------------------------
EF093178 AGAGGGTGAGAATCCCGTACGTGAC
Accession AF149085: Comparing with sequences in the insufficiently identified database
Present best BLAST match to the insufficiently identified database: AF149086 Genbank entry
Species annotation of this match: salal mycorrhizal fungus UBCtra51
Annotation of this match: Salal mycorrhizal fungus UBCtra51 18S ribosomal RNA gene, partial
BLAST E-value and of this match (against AF149085): 0.0, 961
Source publication: Millar,T., Allen,T.R. and Berbee,M.L. Molecular diversity of ericoid mycorrhizal fungi of salal Unpublished
Date of inclusion of this match: 2010-08-18
This sequence lacks a previous (now obsolete) best BLAST match in the insufficiently identified database.
Alignment
Below is the alignment of the insufficiently identified sequence (AF149085) and the best BLAST match from the insufficiently identified database.
If available, the next best BLAST match is also included. Note that this is a Clustal W alignment, and that it as
such may differ slightly from the one performed by BLAST.
Percent identity (of non-gapped bp.): 100 Length: 517 bp. Number of gaps: 1034
AF149085 CATTAAAAAAAAGAGAAACGCCCCGTTTTTTTCATAAGAATGGGTTCTATTCCCTTAAAC
AF149086 CATTAAAAAAAAGAGAAACGCCCCGTTTTTTTCATAAGAATGGGTTCTATTCCCTTAAAC
************************************************************
AF149085 CGTGTCTACATACCTTTGTTGCTTTGGCAGGCCGCCCTCGGGCGTCGGCTCCGGCTGATA
AF149086 CGTGTCTACATACCTTTGTTGCTTTGGCAGGCCGCCCTCGGGCGTCGGCTCCGGCTGATA
************************************************************
AF149085 GTGCCTGCCAGAGGACCCAAACTCTATGTTTAGTGATGTCTGAGTACTATATAATATTTA
AF149086 GTGCCTGCCAGAGGACCCAAACTCTATGTTTAGTGATGTCTGAGTACTATATAATATTTA
************************************************************
AF149085 AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT
AF149086 AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAT
************************************************************
AF149085 AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC
AF149086 AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCC
************************************************************
AF149085 TTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTAGCTTGG
AF149086 TTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTAGCTTGG
************************************************************
AF149085 TATTGGGGTTCGCGTGTTCGCGGCCCTTAAAATCAGTGGCGGTGCCGTCTGGCTCTAAGC
AF149086 TATTGGGGTTCGCGTGTTCGCGGCCCTTAAAATCAGTGGCGGTGCCGTCTGGCTCTAAGC
************************************************************
AF149085 GTAGTAATTTCTCTCGCTATAGGGTTCCGGTGGTTACTTGCCAAAACCCCCCATTTTTCT
AF149086 GTAGTAATTTCTCTCGCTATAGGGTTCCGGTGGTTACTTGCCAAAACCCCCCATTTTTCT
************************************************************
AF149085 AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC
AF149086 AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAAC
*************************************
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